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Dr. A comments on Flagyl use.

As you know, the original Vanderbilt regimen developed by Dr. Stratton's group slowly added each new antibiotic until a continuous program was reached, including the metronidazole. David Wheldoni's modification pulsed the metronidazole, after slowly adding the new antibioticsi. For patients who have severe reactions, I would recommend slowly adding the metronidazole in the pulses – for example, the first pulse might just be one 500 mg tablet of metronidazole. Dr. Stratton has agreed (see his comments on the differences in the two protocolsi) that pulsing the metronidazole is quite acceptable and achieves the same end results as gearing for continuous use.

Also, the pulses don’t have to be rigid – plan them around life events like holidays, birthdays, job requirements, etc. Once you learn when the reactions hit – like on the fourth day after starting, plan for this day to be on a weekend. For those that can get INHi, a “double pulse” of metronidazole/INH might be more effective, but do a slow pulse rather than a full pulse.

Hammerschlag findings:editorial

Here is ariticle co authored by M Hammerschlag on CPn in ashthma and atherosclerosis discussing the culturing of it

the above is clickable abstract :

Persistent infections with Chlamydia pneumoniae have been implicated in the development of chronic diseases, such as atherosclerosis and asthma. Although azithromycin, clarithromycin, and levofloxacin are frequently used for the treatment of respiratory C. pneumoniae infections, little is known about the dose and duration of therapy needed to treat a putative chronic C. pneumoniae infection. In this study, we investigated the effect of prolonged treatment with azithromycin, clarithromycin, or levofloxacin on the viability of C. pneumoniae and cytokinei production in an in vitro model of continuous infection. We found that a 30-day treatment with azithromycin, clarithromycin, and levofloxacin at concentrations comparable to those achieved in the pulmonary epithelial lining fluid reduced but did not eliminate C. pneumoniae in continuously infected HEp-2 cells. All three antibiotics decreased levels of interleukin-6 (IL-6) and IL-8 in HEp-2 cells, but this effect appeared to be secondary to the antichlamydial activity, as the cytokine levels correlated with the concentrations of microorganisms. The levels of IL-1β, IL-4, IL-10, tumor necrosis factor alphai, and gamma interferon were too low to assess the effect of antibiotics. These data suggest that the dosage and duration of antibiotic therapy currently being used may not be sufficient to eradicate a putative chronic C. pneumoniae infection.

INH and Clearing Cpn from immune cells

Looking again at the patent materials and having an interest particularly in their discovery of INHi as an antichlamydial agent I selected this excerpt because of it's importance in restoring immune system functioning in those of us who have been immuno-compromised by Cpni. My daughter, for example, with terrible CFSi/FM, gets every virus which happens by and always gets a worse case of it. Prior to treatment, I also got colds frequently. Cpn infects macrophages and monocytes, rendering these infected immune cells less functional. If this is a predominant site of one's infection, then it stands to reason that your immune system sucks! Or, more accurately, is being sucked on... because Cpn functions parasitically by stealing the mitochondrial energy of the cells it infects.

I have highlighted and underlined some critical ideas in this excerpt. Thanks to Chuck Strattoni, et al for your brilliant and underappreciated discoveries:

Diseases associated with Cpn: the exhaustive list

I have culled from Mitchell & Stratton patent #6,884,784 an exhaustive list of diseasesi where Cpni has been implicated as a possible cause or co-factor (reference: Mitchell & Stratton patent #6,884,784):

Diseases where an association has been discovered between chronic Chlamydia infection of body fluids and/or tissues with several disease syndromes of previously unknown etiology in humans which respond to unique antichlamydial regimens include:

Editorial comment: Strong findings from their research. If you have any of these it suggests to me that at least an empirical course of the combination antibiotic therapy is strongly indicated, with or without serologyi.


Multiple Sclerosis (MSi)
Rheumatoid Arthritis (RA)
Inflammatory Bowel Diseasei (IBD)
Interstitial Cystitisi (IC)
Fibromyalgiai (FM)
Autonomic nervous dysfunction (AND neural-mediated hypotension);
Pyoderma Gangrenosum (PG)
Chronic Fatigue (CF) and Chronic Fatigue Syndromei (CFSi).

Best indicator of B12 deficiency

From Dr. Stratton: Homocystine levels are elevated with B12 and folatei deficiency, but can be reduced by folate alone. On the other hand, serum methyl malonate levels are elevated in B12 deficiency and are not changed by folate. Therefore, serum methyl malonate levels are the best indicator of B12 deficiency.

Stratton/Mitchell & Siram Case Reports

Does it work?

It has been noted that most users of the combination antibiotic protocolsi commenting here have not been on the treatment long enough to give a big enough pool of reports to feel assured of the efficacy of this approach. I had asked Drs. Stratton, Wheldon, and Powell to perhaps tally up at least some basic numbers from their case experience to help us out with this problem, but this would involve problems of confidentiality and use of private data, etc.  

Then, I suddenly realized that we already have a good list of anecdotal reports of response to treatment reported data available to us... right in the Stratton/Mitchell patent materials! (Sheepish, embarrassed grin). So I took it as a project to summarize this data by disease treated. Occasionally I have used the exact wording from the patent materials as they were brief and descriptive. We have the full text referenced in our treatment and links if you want to see more detail.

All reported had with positive serologyi for Cpni using the highly sensitive tests developed by Stratton/Mitchell. I left out a few whose diagnosis was not clear to me, you can see them in the patent materials #6,884,784
All on some form of the combination antibiotic therapy protocol.

Another good reason to take Alpha-Lipoic acid

David Wheldoni offered this citation as another good reason to use alpha-lipoic acid as a supplement on the protocolsi here. This study notes it's anti-inflammatory effect through T-cell inhibition. Although this study is orienting from the autoimmune model of MS, David notes " I read this as positive, if you are taking antibioticsi. While killing the organisms you want as little inflammationi as possible."

Alpha lipoic acid inhibits human T-cell migration: implications for multiple sclerosis.


Marracci GH, McKeon GP, Marquardt WE, Winter RW, Riscoe MK, Bourdette DN.

Another reason to take melatonin

As we know, Cpni binding endotoxini uses up melatonin and supplementation has been helpful to a lot of us. In addition it's an excellent antioxidanti. The study below adds even another reason to supplement it:

J Pineal Res. 2005 Oct;39(3):266-75.

Melatonini neutralizes neurotoxicity induced by quinolinic acid in brain tissue culture.

Folate and Folic Acid in Cpn Treatment

Dr. Stratton now recommends a combination of B12, B6, and folatei - (see abstract). Cellular
replication requires one carbon metabolism. Killing Cpni involves cellular repair and regrowth. Any cellular repair thus is going to require these vitaminsi. When combined with NACi, these vitamins are
very important for mental function.

 J Nutr Health Aging 2002;6(1):39-42    

Folate, vitamin B12 and vitamin B6 and one carbon metabolism.
Selhub J.
JM USDA Human Nutrition Research Center on Aging at Tufts University, Boston, MA, USA. jselhub@hnrc.tufts.edu
The vitamins folic acid, B12 and B6 and B2 are the source of coenzymes which participate in one carbon metabolism. In this metabolism, a carbon unit from serine or glycine is transferred to tetrahydrofolate (THF) to form methylene-THF. This is either used as such for the synthesis of thymidine, which is incorporated into DNA, oxidized to formyl-THF which is used for the synthesis of purines, which are building blocks of RNA and DNA, or it is reduced to methyl-THF which used to methylate homocysteinei to form methionine, a reaction which is catalyzed by a B12-containing methyltransferase. Much of the methionine which is formed is converted to S-adenosylmethionine (SAM), a universal donor of methyl groups, including DNA, RNA, hormones, neurotransmitters, membrane lipids, proteins and others. Because of these functions, interest in recent years has been growing particularly in the area of aging and the possibility that certain diseasesi that afflict the aging population, loss of cognitive function, Alzheimer's diseasei, cardiovascular disease, cancer and others, may be in part explained by inadequate intake or inadequate status of these vitamins. Homocysteine, a product of methionine metabolism as well as a precursor of methionine synthesis, was shown recently to be a risk factor for cardiovascular disease, stroke and thrombosis when its concentration in plasma is slightly elevated. There are now data which show association between elevated plasma homocysteine levels and loss of neurocognitive function and Alzheimer's disease. These associations could be due to a neurotoxic effect of homocysteine or to decreased availability of SAM which results in hypomethylation in the brain tissue. Hypomethylation is also thought to exacerbate depressive tendency in people, and for (colorectal) cancer DNA hypomethylation is thought to be the link between the observed relationship between inadequate folate status and cancer. There are many factors that contribute to the fact that the status of these vitamins in the elderly is inadequate. These factors are in part physiological such as the achlorhydria , which  affects vitamin B12 absorption and in part socioeconomic and habitual. We need more studies to confirm that these vitamins have important functions in the etiology of these diseases. We also need to establish if these diseases can be prevented or diminished by proper nutrition starting at a younger age.

The following is not suggested as an exclusive or recommended source, only as an example of the recommended dose and type of supplement used by Dr. Stratton.

CPn Respiratory infection associated with relapse

Ann Neurol. 2003 Dec;54(6):828-31.
Chlamydia pneumoniae and the risk for exacerbation in multiple sclerosis patients.

Buljevac D, Verkooyen RP, Jacobs BC, Hop W, van der Zwaan LA, van Doorn PA, Hintzen RQ.

Department of Neurology, Erasmus MC, 3000 CA Rotterdam, The Netherlands.

In this prospective study of 73 relapsing remitting multiple sclerosis patients followed up for a mean of 1.7 years, the relation was tested between serologically defined Chlamydia pneumoniae (CP) infection periods and exacerbation rate. Episodes of serologically defined CP infections were observed in a subgroup, and these episodes were associated with increased risk for exacerbation. CP polymerase chain reaction was positive in most of the CP seropositive patients. No correlation was found between the anti-CP antibody increase and titers of control antibodies.

Nurses study shows PPMS associated with CPn

Epidemiology. 2003 Mar;14(2):141-7. Related Articles, Links

Comment in:
Epidemiology. 2003 Mar;14(2):133-4.

Infection with Chlamydia pneumoniae and risk of multiple sclerosis.

Munger KL, Peeling RW, Hernan MA, Chasan-Taber L, Olek MJ, Hankinson SE, Hunter D, Ascherio A.

Department of Nutrition, Harvard School of Public Health, Boston, MA 02115, USA.

BACKGROUND: Chlamydia pneumoniae (Cpni) has been proposed as a possible etiologic agent for multiple sclerosis (MSi), but results of previous studies are conflicting. METHODS: Using a nested case-control design, we examined the association between Cpn infection and MS in the Nurses' Health Study (NHS) and Nurses' Health Study II (NHS II) cohorts. Among 32,826 women in the NHS and 29,722 women in the NHS II with blood samples, 141 incident cases of definite or probable MS were documented. Each case was matched to two healthy controls on year of birth and NHS cohort. Serum samples were tested for the presence of Cpn-specific immunoglobin G antibodies using microimmunofluorescence. RESULTS: Cpn immunoglobin G seropositivity was positively associated with risk of MS (odds ratio [OR] = 1.7; 95% confidence interval [CI] = 1.1-2.7). This association did not change after adjusting for age at blood collection, ancestry, latitude of residence at birth, and smoking (OR = 1.9; CI = 1.1-3.1). Seropositivity for Cpn was only moderately associated with risk of relapsing-remitting MS (OR = 1.7; CI = 0.9-3.2), but it was strongly associated with risk of progressive MS (OR = 7.3; CI = 1.4-37.2). Geometric mean titers of Cpn-specific immunoglobin G antibody were similar in women with relapsing-remitting MS as compared with matched controls (44 vs 39), but they were elevated in women with progressive MS (99 vs 40). CONCLUSIONS: These results support a positive association between Cpn infection and progressive MS.

Expression and localization of type III secretion-related proteins of Chlamydia pneumoniae.

What follows is a study sent to us by Dr Wheldon. Below I have pasted his comment about it...Marie
Med Microbiol Immunol (Berl). 2004 Nov;193(4):163-71. Epub 2003 Oct 31.

Expression and localization of type III secretion-related proteins of Chlamydia pneumoniae.

Lugert R, Kuhns M, Polch T, Gross U.

Department of Bacteriology, University of Gottingen, Kreuzbergring 57, 37075 Gottingen, Germany.

The entire developmental cycle of the obligate intracellulari bacteria Chlamydia pneumoniae takes place within the inclusion body. As many gram negative bacteria, Chlamydia possess a type III-secretion system (TTSS), which allows them to target effector molecules into the host cell. The expression and localization of several proteins constituting the TTSS apparatus and of proteins supposed to be secreted by the TTSS have been investigated. For the TTSS-constituting proteins, we selected representatives such as YscN (ATPase), LcrE (putative "lid" of the TTSS) and LcrH1 (postulated to be a chaperone). Furthermore, we focused on the putative effector proteins IncA, IncB, IncC, Cpn0809 and Cpn1020. Expression of these proteins was detected by reverse transcriptase-PCRi followed by immunoblot analysis using antisera that were generated against the corresponding recombinant proteins. Thereby, expression could be detected on the RNA and/or protein level. Intracellular localization of proteins under investigation was determined by immunofluorescence assays using the respective antisera. YscN was shown to be distributed equally throughout the inclusion body, whereas LcrE gave a more prominent staining of the inclusion membrane. IncA was detected mainly on the membrane of the inclusion body, whereas IncB and IncC were shown to be located within the inclusion. Immunofluorescence assays with antisera raised against Cpn0809 and Cpn1020 showed completely different labeling. Signals corresponding to Cpn0809 and Cpn1020 were distributed within the host cell rather than inside the inclusions. Taken together, the different localization patterns of the effector proteins indicate differences in function and interplay with the host cell.

Take the Two Week Cpn Treatment Poll

I'm trying an experiment with a series of polls that will gather a quick snapshot of cpnhelp.org users experience in treatment. It will only be available 12/30/05 and 1/13/06. Let's see what we get from everyone on a combination antibiotic protocol!

To take the series click on each link below in turn, vote on the appropriate choice, then return here and take the next one in the series.

  1. Primary Diagnosis
  2. Serology
  3. Antibiotics
  4. Antibacteriacidal
  5. Pulses

New member-posted research forum

Our community is getting so good at finding new Cpni related research that I opened a new forum category as a central collection box. We will move appropriate articles to the research page at our leisure.

Mechanisms of Chlamydophila pneumoniae Mediated GM-CSF Release in Human Bronchial Epithelial Cells

Am J Respir Cell Mol Biol. 2005 Dec 9; [Epub ahead of print]

Mechanisms of Chlamydophila pneumoniae Mediated GM-CSF Release in Human Bronchial Epithelial Cells.

Krull M, Bockstaller P, Wuppermann FN, Klucken AC, Muhling J, Schmeck B, Seybold J, Walter C, Maass M, Rosseau S, Hegemann JH, Suttorp N, Hippenstiel S.

Department of Internal Medicine/Infectious Diseasesi, Charite, Universitatsmedizin, Berlin, Germany.

Chlamydophila pneumoniae is an important respiratory pathogen. In this study we characterized C. pneumoniae strain TW183-mediated activation of human small airway epithelial cells (SAEC) and the bronchial epithelial cell line BEAS-2B and demonstrated time-dependent secretion of granulocyte macrophage colony-stimulating factor (GM-CSF) upon stimulation. TW183 activated p38 mitogen activated protein kinase (MAPK) in epithelial cells. Kinase inhibition by SB202190 blocked chlamydia mediated GM-CSF release on mRNA- and protein-level. In addition, the chemical inhibitor as well as dominant negative mutants of p38 MAPK isoforms p38alpha, beta2, and gamma inhibited C. pneumoniae-related NF-kappaB activation. In contrast, blocking of MAPK ERK, c-Jun kinase/JNK or PI-3 Kinase showed no effect on Chlamydia related epithelial cell GM-CSF release. UV-inactivated pathogens as compared to viable bacteria induced a smaller GM-CSF -release suggesting that viable Chlamydia were only partly required for a full effect. Presence of an anti-chlamydial outer membrane protein-A (Omp-A) antibody reduced and addition of recombinant heat-shock protein 60 from C. pneumoniae (cHsp60, GroEL-1) enhanced GM-CSF -release suggesting a role of these proteins in epithelial cell activation. Our data demonstrate that C. pneumoniae triggers an early proinflammatory signaling cascade involving p38 MAPK dependent NF-kappaB activation resulting in subsequent GM-CSF release. C. pneumoniae-induced epithelial cytokinei liberation may contribute significantly to inflammatory airway diseases like chronic obstructive pulmonary disease (COPD) or bronchial asthma.

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